STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTCHD4Patched domain containing 4. (901 aa)    
Predicted Functional Partners:
NPC2
NPC intracellular cholesterol transporter 2.
   
 
  0.630
HIVEP1
Human immunodeficiency virus type I enhancer binding protein 1.
      
 0.543
TMEM178A
Transmembrane protein 178A.
   
  
 0.464
NPC1
NPC intracellular cholesterol transporter 1.
     
0.463
NPC1L1
NPC1 like intracellular cholesterol transporter 1.
     
0.463
DISP3
Dispatched RND transporter family member 3.
   
  
 0.438
FICD
FIC domain containing.
      
 0.410
CHRDL2
Chordin like 2.
      
 0.408
RAG2
Recombination activating 2.
      
 0.408
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.