STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX59DEAD-box helicase 59. (583 aa)    
Predicted Functional Partners:
PES1
Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome; Belongs to the pescadillo family.
   
 0.864
EBNA1BP2
EBNA1 binding protein 2.
   
 0.797
NOP58
NOP58 ribonucleoprotein.
  
 
 0.796
MTREX
Mtr4 exosome RNA helicase.
   
 0.776
GNL3
G protein nucleolar 3.
  
 0.765
GNL3L
G protein nucleolar 3 like.
  
 0.765
BOP1
Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.758
SF3B1
Splicing factor 3b subunit 1.
   
 0.756
DROSHA
Drosha ribonuclease III.
  
 0.752
EIF4A3
Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.
  
0.747
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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