RBM24 protein (Ictidomys tridecemlineatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RBM24

RNA binding motif protein 24. (236 aa)

Predicted Functional Partners:

RBFOX1

0.923

RBFOX2

0.885

SF3B5

0.788

SF3B1

0.782

SF3B3

0.776

DDX42

0.763

Sf3b4

0.680

ELAVL3

0.616

ENSSTOP00000028619

0.610

TRA2A

0.525

Your Current Organism:

Ictidomys tridecemlineatus

NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX42	ENSSTOP00000028619	ENSSTOP00000029270	ENSSTOP00000028619	DEAD-box helicase 42.	Uncharacterized protein.	0.911
DDX42	RBM24	ENSSTOP00000029270	ENSSTOP00000015664	DEAD-box helicase 42.	RNA binding motif protein 24.	0.763
DDX42	SF3B1	ENSSTOP00000029270	ENSSTOP00000031931	DEAD-box helicase 42.	Splicing factor 3b subunit 1.	0.999
DDX42	SF3B3	ENSSTOP00000029270	ENSSTOP00000006324	DEAD-box helicase 42.	Splicing factor 3b subunit 3.	0.998
DDX42	SF3B5	ENSSTOP00000029270	ENSSTOP00000002988	DEAD-box helicase 42.	Splicing factor 3B subunit 5; Belongs to the SF3B5 family.	0.993
DDX42	Sf3b4	ENSSTOP00000029270	ENSSTOP00000000612	DEAD-box helicase 42.	Uncharacterized protein.	0.911
DDX42	TRA2A	ENSSTOP00000029270	ENSSTOP00000010823	DEAD-box helicase 42.	Transformer 2 alpha homolog.	0.404
ELAVL3	RBFOX1	ENSSTOP00000021583	ENSSTOP00000000288	ELAV-like protein; Belongs to the RRM elav family.	RNA binding protein fox-1 homolog 1; RNA-binding protein that regulates alternative splicing events.	0.532
ELAVL3	RBFOX2	ENSSTOP00000021583	ENSSTOP00000013295	ELAV-like protein; Belongs to the RRM elav family.	RNA binding protein fox-1 homolog 2; RNA-binding protein that regulates alternative splicing events.	0.516
ELAVL3	RBM24	ENSSTOP00000021583	ENSSTOP00000015664	ELAV-like protein; Belongs to the RRM elav family.	RNA binding motif protein 24.	0.616
ELAVL3	TRA2A	ENSSTOP00000021583	ENSSTOP00000010823	ELAV-like protein; Belongs to the RRM elav family.	Transformer 2 alpha homolog.	0.654
ENSSTOP00000028619	DDX42	ENSSTOP00000028619	ENSSTOP00000029270	Uncharacterized protein.	DEAD-box helicase 42.	0.911
ENSSTOP00000028619	RBM24	ENSSTOP00000028619	ENSSTOP00000015664	Uncharacterized protein.	RNA binding motif protein 24.	0.610
ENSSTOP00000028619	SF3B1	ENSSTOP00000028619	ENSSTOP00000031931	Uncharacterized protein.	Splicing factor 3b subunit 1.	0.990
ENSSTOP00000028619	SF3B3	ENSSTOP00000028619	ENSSTOP00000006324	Uncharacterized protein.	Splicing factor 3b subunit 3.	0.991
ENSSTOP00000028619	SF3B5	ENSSTOP00000028619	ENSSTOP00000002988	Uncharacterized protein.	Splicing factor 3B subunit 5; Belongs to the SF3B5 family.	0.991
ENSSTOP00000028619	TRA2A	ENSSTOP00000028619	ENSSTOP00000010823	Uncharacterized protein.	Transformer 2 alpha homolog.	0.528
RBFOX1	ELAVL3	ENSSTOP00000000288	ENSSTOP00000021583	RNA binding protein fox-1 homolog 1; RNA-binding protein that regulates alternative splicing events.	ELAV-like protein; Belongs to the RRM elav family.	0.532
RBFOX1	RBM24	ENSSTOP00000000288	ENSSTOP00000015664	RNA binding protein fox-1 homolog 1; RNA-binding protein that regulates alternative splicing events.	RNA binding motif protein 24.	0.923
RBFOX2	ELAVL3	ENSSTOP00000013295	ENSSTOP00000021583	RNA binding protein fox-1 homolog 2; RNA-binding protein that regulates alternative splicing events.	ELAV-like protein; Belongs to the RRM elav family.	0.516