STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEBOXSEBOX homeobox. (190 aa)    
Predicted Functional Partners:
SRF
Serum response factor.
    
 0.606
LDB2
LIM domain binding 2.
    
 0.603
LDB1
LIM domain binding 1.
    
 0.603
TMEM200A
Transmembrane protein 200A.
      
 0.513
LHX4
LIM homeobox 4.
   
 0.479
LHX3
LIM homeobox 3.
   
 0.475
TPK1
Thiamine pyrophosphokinase; Belongs to the thiamine pyrophosphokinase family.
    
  0.468
TCF3
Transcription factor 3.
    
  0.448
TCF4
Transcription factor 4.
    
  0.448
Tcf12
BHLH domain-containing protein.
    
  0.448
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.