STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HOXB1Homeobox B1. (302 aa)    
Predicted Functional Partners:
PBX1
PBX homeobox 1.
    
 0.955
PBX4
PBX homeobox 4.
    
 0.952
PBX2
PBX homeobox 2.
    
 0.894
PBX3
PBX homeobox 3.
    
 0.894
HOXD1
Homeobox D1.
  
0.875
HOXA1
Homeobox A1.
  
0.868
PKNOX1
PBX/knotted 1 homeobox 1.
    
 0.809
PKNOX2
PBX/knotted 1 homeobox 2.
    
 0.754
MEIS3
Meis homeobox 3.
   
 0.662
TGIF2
TGFB induced factor homeobox 2.
    
 0.576
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.