STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCN12Lipocalin 12; Belongs to the calycin superfamily. Lipocalin family. (196 aa)    
Predicted Functional Partners:
CDC73
Cell division cycle 73.
    
 0.720
C8B
Complement C8 beta chain.
   
 0.691
PAF1
PAF1 homolog, Paf1/RNA polymerase II complex component.
    
 0.676
CINP
Cyclin dependent kinase 2 interacting protein.
    
 0.667
CTR9
CTR9 homolog, Paf1/RNA polymerase II complex component.
    
 0.667
Lcn9
Lipocln_cytosolic_FA-bd_dom domain-containing protein; Belongs to the calycin superfamily. Lipocalin family.
   
 
 0.655
HAMP
Hepcidin antimicrobial peptide.
   
 
 0.599
C6
Complement C6.
   
  0.574
C7
Complement C7.
   
  0.574
DAB1
DAB adaptor protein 1.
   
 0.556
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.