STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGFOD22-oxoglutarate and iron dependent oxygenase domain containing 2. (350 aa)    
Predicted Functional Partners:
TRMT2A
tRNA methyltransferase 2 homolog A; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
   
    0.776
PRDM5
Zinc finger protein.
     
 0.752
PRDM4
PR domain zinc finger protein 4; May function as a transcription factor involved in cell differentiation.
     
 0.752
Kmt5a
SET domain-containing protein.
    
 0.706
I3LWE5_ICTTR
Uncharacterized protein.
   
 0.604
CERCAM
Cerebral endothelial cell adhesion molecule.
   
 0.604
COLGALT2
Collagen beta(1-O)galactosyltransferase 2.
   
 0.604
I3N013_ICTTR
Uncharacterized protein.
   
 0.604
LOC101978074
Uncharacterized protein.
   
 0.604
SETDB2
SET domain bifurcated histone lysine methyltransferase 2.
    
  0.595
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.