STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTF1APancreas associated transcription factor 1a. (326 aa)    
Predicted Functional Partners:
RBPJ
Recombination signal binding protein for immunoglobulin kappa J region.
   
 0.734
RBPJL
Recombination signal binding protein for immunoglobulin kappa J region like.
   
 0.729
ISL1
ISL LIM homeobox 1.
   
 0.653
LDB1
LIM domain binding 1.
    
 0.650
LDB2
LIM domain binding 2.
    
 0.632
ISL2
ISL LIM homeobox 2.
   
 0.630
FOXN4
Forkhead box N4.
   
 
 0.630
TCF3
Transcription factor 3.
   
 0.624
TCF4
Transcription factor 4.
   
 0.624
Tcf12
BHLH domain-containing protein.
   
 0.624
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.