I3MYM1_ICTTR protein (Ictidomys tridecemlineatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

I3MYM1_ICTTR

Uncharacterized protein. (210 aa)

Predicted Functional Partners:

SRSF2

0.926

SRSF9

0.836

Srsf1

0.836

RBM8A

0.830

EIF4A3

0.794

I3MM30_ICTTR

0.761

SNRNP35

0.761

U2AF2

0.722

SRSF6

0.706

Znf318

0.706

Your Current Organism:

Ictidomys tridecemlineatus

NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EIF4A3	I3MM30_ICTTR	ENSSTOP00000025261	ENSSTOP00000012536	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.	RRM domain-containing protein.	0.568
EIF4A3	I3MYM1_ICTTR	ENSSTOP00000025261	ENSSTOP00000017217	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.794
EIF4A3	RBM8A	ENSSTOP00000025261	ENSSTOP00000012469	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.999
EIF4A3	SNRNP35	ENSSTOP00000025261	ENSSTOP00000023566	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.	Small nuclear ribonucleoprotein U11/U12 subunit 35.	0.514
EIF4A3	SRSF2	ENSSTOP00000025261	ENSSTOP00000023495	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.	RRM domain-containing protein.	0.891
EIF4A3	SRSF6	ENSSTOP00000025261	ENSSTOP00000009749	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.	Serine and arginine rich splicing factor 6.	0.686
EIF4A3	SRSF9	ENSSTOP00000025261	ENSSTOP00000024026	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.	Serine and arginine rich splicing factor 9.	0.956
EIF4A3	Srsf1	ENSSTOP00000025261	ENSSTOP00000031335	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.990
EIF4A3	U2AF2	ENSSTOP00000025261	ENSSTOP00000018159	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.874
EIF4A3	Znf318	ENSSTOP00000025261	ENSSTOP00000011007	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.635
I3MM30_ICTTR	EIF4A3	ENSSTOP00000012536	ENSSTOP00000025261	RRM domain-containing protein.	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.	0.568
I3MM30_ICTTR	I3MYM1_ICTTR	ENSSTOP00000012536	ENSSTOP00000017217	RRM domain-containing protein.	Uncharacterized protein.	0.761
I3MM30_ICTTR	RBM8A	ENSSTOP00000012536	ENSSTOP00000012469	RRM domain-containing protein.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.719
I3MM30_ICTTR	SRSF2	ENSSTOP00000012536	ENSSTOP00000023495	RRM domain-containing protein.	RRM domain-containing protein.	0.889
I3MM30_ICTTR	SRSF6	ENSSTOP00000012536	ENSSTOP00000009749	RRM domain-containing protein.	Serine and arginine rich splicing factor 6.	0.667
I3MM30_ICTTR	SRSF9	ENSSTOP00000012536	ENSSTOP00000024026	RRM domain-containing protein.	Serine and arginine rich splicing factor 9.	0.844
I3MM30_ICTTR	Srsf1	ENSSTOP00000012536	ENSSTOP00000031335	RRM domain-containing protein.	Uncharacterized protein.	0.941
I3MM30_ICTTR	U2AF2	ENSSTOP00000012536	ENSSTOP00000018159	RRM domain-containing protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.976
I3MM30_ICTTR	Znf318	ENSSTOP00000012536	ENSSTOP00000011007	RRM domain-containing protein.	Uncharacterized protein.	0.650
I3MYM1_ICTTR	EIF4A3	ENSSTOP00000017217	ENSSTOP00000025261	Uncharacterized protein.	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.	0.794