STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX28DEAD-box helicase 28. (540 aa)    
Predicted Functional Partners:
UTP3
UTP3 small subunit processome component.
   
 0.992
NGDN
Neuroguidin.
   
 0.990
ESF1
ESF1 nucleolar pre-rRNA processing protein homolog.
   
 
 0.964
MRM3
Mitochondrial rRNA methyltransferase 3.
  
 
 0.962
WDR46
WD repeat domain 46.
   
 0.948
DDX52
DExD-box helicase 52.
  
0.948
MRPL4
Mitochondrial ribosomal protein L4.
  
 0.943
KRR1
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.939
MALSU1
Mitochondrial assembly of ribosomal large subunit 1.
  
 
 0.936
PDCD11
Programmed cell death 11.
  
 0.928
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.