STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RHBDD2Rhomboid domain containing 2. (303 aa)    
Predicted Functional Partners:
PIGA
Phosphatidylinositol glycan anchor biosynthesis class A.
   
 
  0.595
PIGW
Phosphatidylinositol-glycan biosynthesis class W protein; Probable acetyltransferase, which acetylates the inositol ring of phosphatidylinositol during biosynthesis of GPI-anchor.
   
 
  0.595
RHBDD3
Rhomboid domain containing 3.
      
 0.580
KANSL1
KAT8 regulatory NSL complex subunit 1.
      
 0.560
VCP
Valosin containing protein; Belongs to the AAA ATPase family.
    
 
 0.519
SPATA5
Spermatogenesis associated 5.
    
 
 0.519
SPATA5L1
Spermatogenesis associated 5 like 1.
    
 
 0.519
KANK1
KN motif and ankyrin repeat domains 1.
    
 
 0.504
UBAC2
UBA domain containing 2.
      
 0.453
NOP53
Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family.
      
 0.450
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.