STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VAT1Vesicle amine transport 1. (402 aa)    
Predicted Functional Partners:
SUOX
Sulfite oxidase.
    
 0.887
HSDL2
Hydroxysteroid dehydrogenase like 2.
  
 0.873
FASN
Fatty acid synthase.
 
0.789
Adhfe1
Fe-ADH domain-containing protein.
    
 0.741
KATNAL2
Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.
   
 0.719
SCP2
Sterol carrier protein 2; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.710
GCAT
Glycine C-acetyltransferase.
   
 0.671
SPTLC3
Serine palmitoyltransferase long chain base subunit 3.
   
 0.667
SPTLC2
Serine palmitoyltransferase long chain base subunit 2.
   
 0.647
AASDH
Aminoadipate-semialdehyde dehydrogenase.
    
 0.639
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.