STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCARB1Scavenger receptor class B member 1; Belongs to the CD36 family. (430 aa)    
Predicted Functional Partners:
APOB
Apolipoprotein B.
    
 0.935
APOA1
Apolipoprotein A1.
    
 0.903
APOA4
Apolipoprotein A4.
    
 0.838
TLR4
Toll like receptor 4; Belongs to the Toll-like receptor family.
   
 0.831
CD63
Tetraspanin.
     
 0.822
TLR2
Toll like receptor 2; Belongs to the Toll-like receptor family.
   
 0.775
CD53
Tetraspanin.
   
 
 0.767
PRKN
E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.
     
 0.759
PINK1
PTEN induced kinase 1.
     
 0.759
ITGB1
Integrin beta; Belongs to the integrin beta chain family.
   
 0.751
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.