STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SVIPSmall VCP interacting protein. (77 aa)    
Predicted Functional Partners:
VCP
Valosin containing protein; Belongs to the AAA ATPase family.
    
 0.984
SPATA5
Spermatogenesis associated 5.
    
 0.907
SPATA5L1
Spermatogenesis associated 5 like 1.
    
 0.907
NPLOC4
NPL4 homolog, ubiquitin recognition factor.
    
 0.901
UBXN6
UBX domain protein 6.
    
 0.877
NSFL1C
NSFL1 cofactor.
     
 0.875
UBXN2A
UBX domain protein 2A.
     
 0.875
UBXN1
UBX domain protein 1.
     
 0.872
FAAP100
FA core complex associated protein 100.
    
 0.856
UBXN8
UBX domain protein 8.
     
 0.856
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.