STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPS4BVacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family. (444 aa)    
Predicted Functional Partners:
CHMP2B
Charged multivesicular body protein 2B.
   
 0.995
VTA1
Vesicle trafficking 1.
   
 0.994
CHMP6
Charged multivesicular body protein 6.
    
 0.994
CHMP4C
Charged multivesicular body protein 4C.
    
 0.989
CHMP4B
Charged multivesicular body protein 4B.
    
 0.986
IST1
IST1 factor associated with ESCRT-III.
   
 0.983
I3NBU5_ICTTR
Uncharacterized protein.
    
 0.983
Chmp2a
Uncharacterized protein.
    
 0.983
CHMP1A
Charged multivesicular body protein 1A.
   
 0.981
ENSSTOP00000027807
Uncharacterized protein.
   
 0.981
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.