STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NEDD8NEDD8 ubiquitin like modifier. (81 aa)    
Predicted Functional Partners:
UBA3
Ubiquitin like modifier activating enzyme 3.
    
 0.999
SENP8
SUMO peptidase family member, NEDD8 specific.
    
 0.999
UBE2M
Ubiquitin conjugating enzyme E2 M; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.997
CUL1
Cullin 1; Belongs to the cullin family.
    
 0.994
COPS5
COP9 signalosome subunit 5.
   
 0.994
Ubxn7
UBX domain-containing protein 7.
    
 0.994
GPS1
G protein pathway suppressor 1.
    
 0.994
COPS6
COP9 signalosome subunit 6.
   
 0.993
CUL2
Cullin 2; Belongs to the cullin family.
    
 0.993
MYSM1
Myb like, SWIRM and MPN domains 1.
   
 0.993
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.