STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG2Secretogranin II. (579 aa)    
Predicted Functional Partners:
CHGB
Chromogranin B.
   
  
 0.901
CHGA
Chromogranin A.
   
 
 0.697
RLN3
Relaxin 3.
  
   
 0.635
NOS1AP
Nitric oxide synthase 1 adaptor protein.
      
 0.618
SCG3
Secretogranin III.
   
  
 0.607
AVP
Arginine vasopressin; Belongs to the vasopressin/oxytocin family.
   
  
 0.567
SCG5
Secretogranin V.
   
  
 0.566
NMU
Neuromedin U.
   
  
 0.552
CPE
Carboxypeptidase E.
   
  
 0.498
TAC3
Tachykinin 3.
      
 0.451
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.