STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KINKin17 DNA and RNA binding protein. (393 aa)    
Predicted Functional Partners:
METTL22
Methyltransferase like 22.
    
 0.980
RBMX2
RNA binding motif protein X-linked 2.
   
   0.924
SF3B3
Splicing factor 3b subunit 3.
    
   0.908
SF3B1
Splicing factor 3b subunit 1.
    
   0.908
SF3A2
Splicing factor 3a subunit 2.
    
 
 0.904
SF3A3
Splicing factor 3a subunit 3.
    
 
 0.903
BUD13
BUD13 homolog.
   
   0.858
PRPF38A
Pre-mRNA processing factor 38A.
   
   0.858
EFTUD2
Elongation factor Tu GTP binding domain containing 2.
    
   0.845
SNRNP200
Small nuclear ribonucleoprotein U5 subunit 200.
    
   0.845
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.