STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALOX12BArachidonate 12-lipoxygenase, 12R type. (701 aa)    
Predicted Functional Partners:
PLA2G4A
Phospholipase A2.
    
 0.902
LTC4S
Leukotriene C4 synthase.
   
 0.875
PTGS1
Prostaglandin-endoperoxide synthase 1.
   
 
 0.872
PLA2G2A
Phospholipase A(2).
    
 0.872
LTA4H
Leukotriene A(4) hydrolase; Belongs to the peptidase M1 family.
     
 0.869
PLA2G3
Phospholipase A2 group III.
    
 0.867
PLA2G4C
Phospholipase A2 group IVC.
     
 0.866
PLA2G4F
Phospholipase A2.
     
 0.862
Pla2g4b
Phospholipase A2.
     
 0.858
PLA2G4E
Phospholipase A2.
     
 0.858
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.