STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TNFSF13BTNF superfamily member 13b; Belongs to the tumor necrosis factor family. (280 aa)    
Predicted Functional Partners:
TNFRSF17
TNF receptor superfamily member 17.
    
 0.995
Tnfrsf13c
Uncharacterized protein.
    
 0.995
Tnfrsf13b
Uncharacterized protein.
    
 0.979
CD40LG
CD40 ligand; Cytokine that acts as a ligand to CD40/TNFRSF5. Costimulates T-cell proliferation and cytokine production. Involved in immunoglobulin class switching.
   
 
 0.851
TNFSF12
TNF superfamily member 12; Belongs to the tumor necrosis factor family.
   
 0.848
TNFSF11
TNF superfamily member 11; Belongs to the tumor necrosis factor family.
   
 0.842
LOC101969506
Ig-like domain-containing protein.
    
 
 0.820
I3MA78_ICTTR
Ig-like domain-containing protein.
    
 
 0.820
TRAF3
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.811
FAM160A2
Family with sequence similarity 160 member A2.
    
   0.765
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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