STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAB40CRAB40C, member RAS oncogene family. (281 aa)    
Predicted Functional Partners:
ELOC
Skp1_POZ domain-containing protein; Belongs to the SKP1 family.
    
 
 0.904
CUL5
Cullin 5; Belongs to the cullin family.
    
 
 0.802
MTHFSD
Methenyltetrahydrofolate synthetase domain containing.
   
    0.797
CHM
Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.
    
 0.793
WDR6
WD repeat domain 6.
   
    0.790
NIPSNAP1
Nipsnap homolog 1.
   
 
  0.789
NIPSNAP2
Nipsnap homolog 2.
   
 
  0.789
UTP15
UTP15 small subunit processome component.
   
    0.789
SETD3
Protein-histidine N-methyltransferase.
   
    0.787
SMIM12
Small integral membrane protein 12.
   
    0.767
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.