STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SALL1Spalt like transcription factor 1. (1313 aa)    
Predicted Functional Partners:
Nanog
Homeobox domain-containing protein.
   
 0.876
GATAD2B
GATA zinc finger domain containing 2B.
    
 0.734
RBBP7
RB binding protein 7, chromatin remodeling factor.
    
 0.710
RBBP4
RB binding protein 4, chromatin remodeling factor.
    
 0.708
GATAD2A
GATA zinc finger domain containing 2A.
    
 0.700
SALL4
Spalt like transcription factor 4.
    
0.696
WDR73
WD repeat domain 73.
    
 0.680
CHD3
Chromodomain helicase DNA binding protein 3.
    
 0.679
MTA1
Metastasis associated 1.
    
 0.672
Pou5f1
POU domain protein.
   
 0.664
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.