STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PKDREJPolycystin family receptor for egg jelly. (2034 aa)    
Predicted Functional Partners:
Pkd2
EF-hand domain-containing protein.
    
0.868
PKD2L2
Polycystin 2 like 2, transient receptor potential cation channel.
    
0.868
MYOT
Myotilin.
    
 0.805
Pkd1l2
Uncharacterized protein.
    
0.679
CCDC25
Coiled-coil domain containing 25.
    
 0.677
C9orf131
Chromosome 9 open reading frame 131.
    
 
 0.637
EXOC5
Exocyst complex component 5.
     
 0.627
LOC101955654
Uncharacterized protein.
   
  
 0.606
Fcgbp
Uncharacterized protein.
      
 0.592
RHO
Rhodopsin.
     
 0.577
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.