STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP38Ubiquitin specific peptidase 38; Belongs to the peptidase C19 family. (1042 aa)    
Predicted Functional Partners:
WDR48
WD repeat domain 48.
    
 0.951
DMWD
DM1 locus, WD repeat containing.
    
 0.873
WDR20
WD repeat domain 20.
    
 0.873
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.837
ENSSTOP00000028703
Ubiquitin-like domain-containing protein.
    
 0.837
Rps27a
Ubiquitin-like domain-containing protein.
    
 0.805
LOC101966763
Ubiquitin-like domain-containing protein.
    
 0.805
ENSSTOP00000031366
Ubiquitin-like domain-containing protein.
    
 0.805
FANCD2
FA complementation group D2.
    
 0.796
FANCI
FA complementation group I.
    
 0.725
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.