STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUSD5Sushi domain containing 5. (632 aa)    
Predicted Functional Partners:
POLD2
DNA polymerase delta 2, accessory subunit.
    
 0.770
LOC101965836
Tudor domain-containing protein.
    
 0.765
SNRPD2
Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome.
    
 0.723
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
    
  0.722
MUS81
MUS81 structure-specific endonuclease subunit.
    
 0.694
POLD1
DNA polymerase.
   
 0.674
DDX20
DEAD-box helicase 20.
   
 0.669
ERCC4
ERCC excision repair 4, endonuclease catalytic subunit.
    
 0.629
I3M5T4_ICTTR
DUF4062 domain-containing protein.
    
 0.618
TEP1
Telomerase associated protein 1.
    
 0.618
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.