STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF113ARing finger protein 113A. (344 aa)    
Predicted Functional Partners:
CWC27
CWC27 spliceosome associated cyclophilin.
    
 0.997
CWC22
CWC22 spliceosome associated protein homolog.
    
 0.997
DHX16
DEAH-box helicase 16.
    
 0.996
SNRNP200
Small nuclear ribonucleoprotein U5 subunit 200.
   
 0.995
CDC5L
Cell division cycle 5 like.
    
 
 0.993
CDC40
Cell division cycle 40.
    
 0.992
PRPF19
Pre-mRNA processing factor 19.
    
 
 0.984
SF3B2
Splicing factor 3b subunit 2.
    
 0.983
BUD13
BUD13 homolog.
    
 0.981
SF3A2
Splicing factor 3a subunit 2.
    
 0.981
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.