STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101969646WD_REPEATS_REGION domain-containing protein. (464 aa)    
Predicted Functional Partners:
DDB1
Damage specific DNA binding protein 1.
    
 
 0.875
CCT5
Chaperonin containing TCP1 subunit 5.
    
   0.604
I3M4Y2_ICTTR
Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.
      
 0.435
CUL4A
Cullin 4A; Belongs to the cullin family.
    
 
 0.422
CUL4B
Cullin 4B; Belongs to the cullin family.
    
 
 0.422
DCAF6
DDB1 and CUL4 associated factor 6.
      
 0.408
MCTP1
Multiple C2 and transmembrane domain containing 1.
      
 0.408
WDR37
WD repeat domain 37.
      
 0.408
DCAF5
DDB1 and CUL4 associated factor 5.
      
 0.408
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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