STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TNFSF13TNF superfamily member 13; Belongs to the tumor necrosis factor family. (250 aa)    
Predicted Functional Partners:
TNFSF12
TNF superfamily member 12; Belongs to the tumor necrosis factor family.
 
 
 0.950
Tnfrsf13b
Uncharacterized protein.
    
 0.948
TNFRSF17
TNF receptor superfamily member 17.
    
 0.943
TNFRSF12A
TNF receptor superfamily member 12A.
     
 0.831
Tnfrsf13c
Uncharacterized protein.
    
 0.802
TNFSF13B
TNF superfamily member 13b; Belongs to the tumor necrosis factor family.
   
 
0.714
C8B
Complement C8 beta chain.
   
 0.623
IL33
Interleukin 33.
    
 0.608
IL1A
Interleukin-1; Belongs to the IL-1 family.
   
 0.589
IL1B
Multifunctional fusion protein; Potent proinflammatory cytokine. Initially discovered as the major endogenous pyrogen, induces prostaglandin synthesis, neutrophil influx and activation, T-cell activation and cytokine production, B- cell activation and antibody production, and fibroblast proliferation and collagen production; Belongs to the IL-1 family.
   
 0.574
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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