STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSTOP00000027583Uncharacterized protein. (480 aa)    
Predicted Functional Partners:
RANBP2
RAN binding protein 2.
   
 0.984
NUP107
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
    
 0.953
NUP153
Nucleoporin 153.
   
 0.944
NUP205
Nucleoporin 205.
   
 0.895
LEKR1
Leucine, glutamate and lysine rich 1.
 
  
   0.893
SEH1L
SEH1 like nucleoporin; Belongs to the WD repeat SEC13 family.
    
 0.890
NUP93
Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.
   
 0.888
NUP85
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
    
 0.886
NXF1
Nuclear RNA export factor 1.
   
 0.885
LOC101973495
Uncharacterized protein.
   
 0.885
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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