STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSTOP00000028967Uncharacterized protein. (1864 aa)    
Predicted Functional Partners:
ENSSTOP00000032440
G_PROTEIN_RECEP_F2_4 domain-containing protein.
 
     0.942
FRAS1
Fraser extracellular matrix complex subunit 1.
   
0.858
PDZD7
PDZ domain containing 7.
    
 
 0.668
USH2A
Usherin.
      
0.609
WHRN
Whirlin.
      
 0.607
NPNT
Nephronectin.
     
 0.573
TTC8
Tetratricopeptide repeat domain 8.
      
 0.561
TECTB
Tectorin beta.
      
 0.554
LOXHD1
Lipoxygenase homology domains 1.
  
   
 0.549
USH1C
USH1 protein network component harmonin.
    
 
 0.546
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.