STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSTOP00000030920Uncharacterized protein. (284 aa)    
Predicted Functional Partners:
HNRNPK
Heterogeneous nuclear ribonucleoprotein K.
   
 0.858
HNRNPM
Heterogeneous nuclear ribonucleoprotein M.
   
 0.840
Srsf1
Uncharacterized protein.
   
 0.806
Hnrnpu
B30.2/SPRY domain-containing protein.
   
 0.796
SF3B1
Splicing factor 3b subunit 1.
   
 0.794
TRA2B
Transformer 2 beta homolog.
  
0.792
HNRNPL
Heterogeneous nuclear ribonucleoprotein L.
   
 0.785
FAU
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
  0.783
SRSF7
Serine and arginine rich splicing factor 7.
   
 0.756
PTBP1
Polypyrimidine tract binding protein 1.
   
 0.747
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.