STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSTOP00000030961RRM domain-containing protein. (136 aa)    
Predicted Functional Partners:
TRA2B
Transformer 2 beta homolog.
   
 0.980
SRSF2
RRM domain-containing protein.
   
 0.976
SRSF7
Serine and arginine rich splicing factor 7.
   
0.973
RBM8A
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
   
 0.969
EIF4A3
Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.
   
 0.963
Srsf1
Uncharacterized protein.
   
 0.957
TRA2A
Transformer 2 alpha homolog.
   
 0.933
SRSF9
Serine and arginine rich splicing factor 9.
   
 0.900
SRSF10
Serine and arginine rich splicing factor 10.
   
0.887
NXF1
Nuclear RNA export factor 1.
    
 0.876
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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