STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL3A1Collagen type III alpha 1 chain. (1462 aa)    
Predicted Functional Partners:
COL1A2
Collagen type I alpha 2 chain.
  
0.999
COL1A1
Collagen type I alpha 1 chain.
  
 
0.996
COL5A2
Collagen type V alpha 2 chain.
  
 
0.988
PCOLCE
Procollagen C-endopeptidase enhancer.
   
 0.966
LUM
Lumican.
   
 0.943
DCN
Decorin; May affect the rate of fibrils formation.
   
 
 0.932
COL5A1
Collagen type V alpha 1 chain.
  
 
0.929
Col6a1
Uncharacterized protein.
  
0.916
FBN1
Fibrillin 1.
   
 0.908
POSTN
Periostin.
   
 
 0.906
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.