STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101956307Histone H3; Belongs to the histone H3 family. (136 aa)    
Predicted Functional Partners:
KDM6B
Lysine demethylase 6B.
   
 0.961
KDM6A
Lysine demethylase 6A.
   
 0.961
RBBP5
RB binding protein 5, histone lysine methyltransferase complex subunit.
    
 0.876
ARID4B
AT-rich interaction domain 4B.
   
 0.873
ARID4A
AT-rich interaction domain 4A.
   
 0.873
SETD2
SET domain containing 2, histone lysine methyltransferase.
   
 0.868
ASH2L
ASH2 like, histone lysine methyltransferase complex subunit.
    
 0.863
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 
 0.863
KDM2A
Lysine demethylase 2A.
    
 0.847
KDM2B
Lysine demethylase 2B.
    
 0.847
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.