DPF2 protein (Ictidomys tridecemlineatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DPF2

Double PHD fingers 2. (405 aa)

Predicted Functional Partners:

SMARCE1

0.992

SMARCB1

0.992

SMARCD1

0.989

SMARCA4

0.987

SMARCC2

0.984

SMARCC1

0.983

ARID1B

0.980

I3N0W3_ICTTR

0.977

Arid1a

0.977

SMARCA2

0.975

Your Current Organism:

Ictidomys tridecemlineatus

NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARID1B	Arid1a	ENSSTOP00000014306	ENSSTOP00000027306	AT-rich interaction domain 1B.	ARID domain-containing protein.	0.980
ARID1B	DPF2	ENSSTOP00000014306	ENSSTOP00000032228	AT-rich interaction domain 1B.	Double PHD fingers 2.	0.980
ARID1B	I3N0W3_ICTTR	ENSSTOP00000014306	ENSSTOP00000018009	AT-rich interaction domain 1B.	BAF250_C domain-containing protein.	0.980
ARID1B	SMARCA2	ENSSTOP00000014306	ENSSTOP00000006128	AT-rich interaction domain 1B.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2.	0.993
ARID1B	SMARCA4	ENSSTOP00000014306	ENSSTOP00000024406	AT-rich interaction domain 1B.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4.	0.996
ARID1B	SMARCB1	ENSSTOP00000014306	ENSSTOP00000011122	AT-rich interaction domain 1B.	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Belongs to the SNF5 family.	0.996
ARID1B	SMARCC1	ENSSTOP00000014306	ENSSTOP00000007415	AT-rich interaction domain 1B.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1.	0.995
ARID1B	SMARCC2	ENSSTOP00000014306	ENSSTOP00000003133	AT-rich interaction domain 1B.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2.	0.995
ARID1B	SMARCD1	ENSSTOP00000014306	ENSSTOP00000024844	AT-rich interaction domain 1B.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1.	0.994
ARID1B	SMARCE1	ENSSTOP00000014306	ENSSTOP00000001935	AT-rich interaction domain 1B.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1.	0.996
Arid1a	ARID1B	ENSSTOP00000027306	ENSSTOP00000014306	ARID domain-containing protein.	AT-rich interaction domain 1B.	0.980
Arid1a	DPF2	ENSSTOP00000027306	ENSSTOP00000032228	ARID domain-containing protein.	Double PHD fingers 2.	0.977
Arid1a	I3N0W3_ICTTR	ENSSTOP00000027306	ENSSTOP00000018009	ARID domain-containing protein.	BAF250_C domain-containing protein.	0.933
Arid1a	SMARCA2	ENSSTOP00000027306	ENSSTOP00000006128	ARID domain-containing protein.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2.	0.990
Arid1a	SMARCA4	ENSSTOP00000027306	ENSSTOP00000024406	ARID domain-containing protein.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4.	0.994
Arid1a	SMARCB1	ENSSTOP00000027306	ENSSTOP00000011122	ARID domain-containing protein.	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Belongs to the SNF5 family.	0.993
Arid1a	SMARCC1	ENSSTOP00000027306	ENSSTOP00000007415	ARID domain-containing protein.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1.	0.990
Arid1a	SMARCC2	ENSSTOP00000027306	ENSSTOP00000003133	ARID domain-containing protein.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2.	0.993
Arid1a	SMARCD1	ENSSTOP00000027306	ENSSTOP00000024844	ARID domain-containing protein.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1.	0.993
Arid1a	SMARCE1	ENSSTOP00000027306	ENSSTOP00000001935	ARID domain-containing protein.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1.	0.993