STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRPH2Peripherin 2; Belongs to the tetraspanin (TM4SF) family. (292 aa)    
Predicted Functional Partners:
ROM1
Retinal outer segment membrane protein 1.
  
 
0.967
AMELX
Amelogenin X-linked.
   
 
 0.900
LOC101958816
Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.
   
  
 0.899
LOC101969021
Uncharacterized protein.
   
    0.898
NPY2R
Neuropeptide Y receptor Y2; Belongs to the G-protein coupled receptor 1 family.
   
    0.898
GHRH
Growth hormone releasing hormone.
   
    0.891
OPTC
Opticin.
   
  
 0.819
MST1R
Macrophage stimulating 1 receptor.
    
  0.686
MET
MET proto-oncogene, receptor tyrosine kinase.
    
  0.686
RHO
Rhodopsin.
   
  
 0.652
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.