STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKL_0038Predicted sensory transduction histidine kinase. (478 aa)    
Predicted Functional Partners:
CKL_0037
Conserved hypothetical protein.
 
     0.949
CKL_0039
Predicted transcriptional regulator.
 
 
 0.934
CKL_1108
Predicted sensor protein.
 
 
0.931
CKL_0036
Predicted ABC transporter; ATPase component.
 
     0.863
CKL_2437
Predicted transcriptional regulator.
 
 
 0.794
CKL_2548
Transcriptional regulator.
 
 0.763
CKL_2322
Predicted transcriptional regulator.
 
 
 0.761
CKL_3637
Predicted transcriptional regulator.
 
 
 0.754
CKL_1682
Transcriptional regulator.
 
 
 0.749
CKL_2350
Predicted transcriptional regulator.
 
 
 0.744
Your Current Organism:
Clostridium kluyveri
NCBI taxonomy Id: 431943
Other names: C. kluyveri DSM 555, Clostridium kluyveri DSM 555, Clostridium kluyveri str. DSM 555, Clostridium kluyveri strain DSM 555
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.