node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CKL_0641 | CKL_0642 | CKL_0641 | CKL_0642 | Conserved hypothetical protein; Belongs to the UPF0229 family. | Predicted serine kinase. | 0.997 |
CKL_0641 | spoVR | CKL_0641 | CKL_0640 | Conserved hypothetical protein; Belongs to the UPF0229 family. | SpoVR; Stage V sporulation protein R. | 0.996 |
CKL_0642 | CKL_0641 | CKL_0642 | CKL_0641 | Predicted serine kinase. | Conserved hypothetical protein; Belongs to the UPF0229 family. | 0.997 |
CKL_0642 | spoVR | CKL_0642 | CKL_0640 | Predicted serine kinase. | SpoVR; Stage V sporulation protein R. | 0.997 |
cotJB | cotJC | CKL_0677 | CKL_0676 | CotJB; Predicted spore coat protein CotJB. | CotJC; Predicted spore coat protein CotJC. | 0.992 |
cotJB | smpB | CKL_0677 | CKL_3375 | CotJB; Predicted spore coat protein CotJB. | Hypothetical protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] | 0.408 |
cotJB | spoIIAB | CKL_0677 | CKL_3155 | CotJB; Predicted spore coat protein CotJB. | SpoIIAB; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition. | 0.464 |
cotJB | spoIIM | CKL_0677 | CKL_1239 | CotJB; Predicted spore coat protein CotJB. | SpoIIM; Predicted stage II sporulation protein M. | 0.563 |
cotJB | spoVG | CKL_0677 | CKL_0145 | CotJB; Predicted spore coat protein CotJB. | Predicted stage V sporulation protein G; Could be involved in septation. | 0.408 |
cotJB | spoVR | CKL_0677 | CKL_0640 | CotJB; Predicted spore coat protein CotJB. | SpoVR; Stage V sporulation protein R. | 0.583 |
cotJC | cotJB | CKL_0676 | CKL_0677 | CotJC; Predicted spore coat protein CotJC. | CotJB; Predicted spore coat protein CotJB. | 0.992 |
cotJC | smpB | CKL_0676 | CKL_3375 | CotJC; Predicted spore coat protein CotJC. | Hypothetical protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] | 0.586 |
cotJC | spoIIAB | CKL_0676 | CKL_3155 | CotJC; Predicted spore coat protein CotJC. | SpoIIAB; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition. | 0.426 |
cotJC | spoIIM | CKL_0676 | CKL_1239 | CotJC; Predicted spore coat protein CotJC. | SpoIIM; Predicted stage II sporulation protein M. | 0.620 |
cotJC | spoVG | CKL_0676 | CKL_0145 | CotJC; Predicted spore coat protein CotJC. | Predicted stage V sporulation protein G; Could be involved in septation. | 0.558 |
cotJC | spoVR | CKL_0676 | CKL_0640 | CotJC; Predicted spore coat protein CotJC. | SpoVR; Stage V sporulation protein R. | 0.612 |
smpB | cotJB | CKL_3375 | CKL_0677 | Hypothetical protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] | CotJB; Predicted spore coat protein CotJB. | 0.408 |
smpB | cotJC | CKL_3375 | CKL_0676 | Hypothetical protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] | CotJC; Predicted spore coat protein CotJC. | 0.586 |
smpB | spoIIAA | CKL_3375 | CKL_3156 | Hypothetical protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] | SpoIIAA; Anti-sigma F factor antagonist; Belongs to the anti-sigma-factor antagonist family. | 0.416 |
smpB | spoIIAB | CKL_3375 | CKL_3155 | Hypothetical protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] | SpoIIAB; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition. | 0.457 |