CKL_1171 protein (Clostridium kluyveri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CKL_1171

Conserved hypothetical protein. (186 aa)

Predicted Functional Partners:

CKL_1170

0.766

CKL_1166

0.715

fleN

0.691

flhA

0.681

flhF

0.681

flgG1

0.645

flgG2

0.613

fliQ

0.602

fliO

0.598

fliP

0.598

Your Current Organism:

Clostridium kluyveri

NCBI taxonomy Id: 431943
Other names: C. kluyveri DSM 555, Clostridium kluyveri DSM 555, Clostridium kluyveri str. DSM 555, Clostridium kluyveri strain DSM 555

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CKL_1166	CKL_1170	CKL_1166	CKL_1170	Fusion of flagellar biosynthesis proteins FliR and FlhB; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family.	RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.973
CKL_1166	CKL_1171	CKL_1166	CKL_1171	Fusion of flagellar biosynthesis proteins FliR and FlhB; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family.	Conserved hypothetical protein.	0.715
CKL_1166	fleN	CKL_1166	CKL_1169	Fusion of flagellar biosynthesis proteins FliR and FlhB; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family.	FleN; Flagellar synthesis regulator FleN.	0.989
CKL_1166	flgG1	CKL_1166	CKL_1172	Fusion of flagellar biosynthesis proteins FliR and FlhB; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family.	FlgG1; Flagellar basal-body rod protein.	0.998
CKL_1166	flgG2	CKL_1166	CKL_1173	Fusion of flagellar biosynthesis proteins FliR and FlhB; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family.	FlgG2; Flagellar basal-body rod protein.	0.998
CKL_1166	flhA	CKL_1166	CKL_1167	Fusion of flagellar biosynthesis proteins FliR and FlhB; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family.	FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.	0.999
CKL_1166	flhF	CKL_1166	CKL_1168	Fusion of flagellar biosynthesis proteins FliR and FlhB; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family.	FlhF; Flagellar biosynthesis protein FlhF.	0.998
CKL_1166	fliO	CKL_1166	CKL_1163	Fusion of flagellar biosynthesis proteins FliR and FlhB; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family.	FliO; Flagellar biosynthesis protein FliO.	0.999
CKL_1166	fliP	CKL_1166	CKL_1164	Fusion of flagellar biosynthesis proteins FliR and FlhB; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family.	FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.	0.999
CKL_1166	fliQ	CKL_1166	CKL_1165	Fusion of flagellar biosynthesis proteins FliR and FlhB; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family.	FliQ; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family.	0.999
CKL_1170	CKL_1166	CKL_1170	CKL_1166	RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Fusion of flagellar biosynthesis proteins FliR and FlhB; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family.	0.973
CKL_1170	CKL_1171	CKL_1170	CKL_1171	RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	Conserved hypothetical protein.	0.766
CKL_1170	fleN	CKL_1170	CKL_1169	RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	FleN; Flagellar synthesis regulator FleN.	0.882
CKL_1170	flgG1	CKL_1170	CKL_1172	RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	FlgG1; Flagellar basal-body rod protein.	0.916
CKL_1170	flgG2	CKL_1170	CKL_1173	RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	FlgG2; Flagellar basal-body rod protein.	0.887
CKL_1170	flhA	CKL_1170	CKL_1167	RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.	0.941
CKL_1170	flhF	CKL_1170	CKL_1168	RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	FlhF; Flagellar biosynthesis protein FlhF.	0.900
CKL_1170	fliO	CKL_1170	CKL_1163	RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	FliO; Flagellar biosynthesis protein FliO.	0.888
CKL_1170	fliP	CKL_1170	CKL_1164	RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.	0.897
CKL_1170	fliQ	CKL_1170	CKL_1165	RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	FliQ; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family.	0.936