STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gerKA2GerKA2; Predicted spore germination protein. (498 aa)    
Predicted Functional Partners:
gerKC2
GerKC2; Predicted spore germination protein.
 
  
 0.953
gerKB2
GerKB2; Predicted spore germination protein.
 
  
 0.949
gerKC1
GerKC1; Predicted spore germination protein GerKC.
 
  
 0.811
CKL_1591
Predicted stage V sporulation protein AD.
  
  
 0.787
gpr
Gpr; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
  
 0.779
CKL_1590
Predicted stage V sporulation protein AE.
  
  
 0.778
CKL_1592
Predicted stage V sporulation protein AC.
  
  
 0.774
CKL_1236
Predicted stage IV sporulation protein B.
  
     0.773
CKL_1362
Hypothetical protein; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
     0.772
sigE2
SigE2; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
     0.770
Your Current Organism:
Clostridium kluyveri
NCBI taxonomy Id: 431943
Other names: C. kluyveri DSM 555, Clostridium kluyveri DSM 555, Clostridium kluyveri str. DSM 555, Clostridium kluyveri strain DSM 555
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.