Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CKL_1441 | clpA | CKL_1441 | CKL_2335 | Predicted protease. | ClpA homolog protein; Belongs to the ClpA/ClpB family. | 0.709 |
CKL_1441 | clpS | CKL_1441 | CKL_2336 | Predicted protease. | ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family. | 0.544 |
CKL_1441 | dnaK6 | CKL_1441 | CKL_2337 | Predicted protease. | DnaK6; Chaperone protein. | 0.406 |
CKL_1441 | dnaK7 | CKL_1441 | CKL_2338 | Predicted protease. | DnaK7; Chaperone protein. | 0.406 |
CKL_1441 | dnaK8 | CKL_1441 | CKL_2340 | Predicted protease. | DnaK8; Chaperone protein; Belongs to the heat shock protein 70 family. | 0.406 |
CKL_1441 | dnaK9 | CKL_1441 | CKL_2341 | Predicted protease. | DnaK9; Chaperone protein; Belongs to the heat shock protein 70 family. | 0.406 |
CKL_1441 | grpE | CKL_1441 | CKL_0901 | Predicted protease. | GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interacti [...] | 0.620 |
CKL_2641 | clpA | CKL_2641 | CKL_2335 | Phage-related protease; Belongs to the peptidase S14 family. | ClpA homolog protein; Belongs to the ClpA/ClpB family. | 0.724 |
CKL_2641 | clpS | CKL_2641 | CKL_2336 | Phage-related protease; Belongs to the peptidase S14 family. | ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family. | 0.544 |
CKL_2641 | dnaK6 | CKL_2641 | CKL_2337 | Phage-related protease; Belongs to the peptidase S14 family. | DnaK6; Chaperone protein. | 0.425 |
CKL_2641 | dnaK7 | CKL_2641 | CKL_2338 | Phage-related protease; Belongs to the peptidase S14 family. | DnaK7; Chaperone protein. | 0.425 |
CKL_2641 | dnaK8 | CKL_2641 | CKL_2340 | Phage-related protease; Belongs to the peptidase S14 family. | DnaK8; Chaperone protein; Belongs to the heat shock protein 70 family. | 0.425 |
CKL_2641 | dnaK9 | CKL_2641 | CKL_2341 | Phage-related protease; Belongs to the peptidase S14 family. | DnaK9; Chaperone protein; Belongs to the heat shock protein 70 family. | 0.425 |
CKL_2641 | grpE | CKL_2641 | CKL_0901 | Phage-related protease; Belongs to the peptidase S14 family. | GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interacti [...] | 0.705 |
clpA | CKL_1441 | CKL_2335 | CKL_1441 | ClpA homolog protein; Belongs to the ClpA/ClpB family. | Predicted protease. | 0.709 |
clpA | CKL_2641 | CKL_2335 | CKL_2641 | ClpA homolog protein; Belongs to the ClpA/ClpB family. | Phage-related protease; Belongs to the peptidase S14 family. | 0.724 |
clpA | clpP | CKL_2335 | CKL_3351 | ClpA homolog protein; Belongs to the ClpA/ClpB family. | ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. | 0.761 |
clpA | clpS | CKL_2335 | CKL_2336 | ClpA homolog protein; Belongs to the ClpA/ClpB family. | ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family. | 0.981 |
clpA | dnaK6 | CKL_2335 | CKL_2337 | ClpA homolog protein; Belongs to the ClpA/ClpB family. | DnaK6; Chaperone protein. | 0.823 |
clpA | dnaK7 | CKL_2335 | CKL_2338 | ClpA homolog protein; Belongs to the ClpA/ClpB family. | DnaK7; Chaperone protein. | 0.816 |
page 1 of 5