Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
CKL_0389 | CKL_0397 | Two-component sensor kinase. | Conserved hypothetical protein. | 0.936 |
CKL_0389 | CKL_3116 | Two-component sensor kinase. | Conserved hypothetical protein. | 0.922 |
CKL_0389 | CKL_3318 | Two-component sensor kinase. | Predicted two-component sensor histidine kinase. | 0.925 |
CKL_0389 | CKL_3367 | Two-component sensor kinase. | AgrB-like protein. | 0.930 |
CKL_0389 | CKL_3368 | Two-component sensor kinase. | Predicted two-component sensor histidine kinase. | 0.921 |
CKL_0397 | CKL_0389 | Conserved hypothetical protein. | Two-component sensor kinase. | 0.936 |
CKL_0397 | CKL_3116 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.900 |
CKL_0397 | CKL_3318 | Conserved hypothetical protein. | Predicted two-component sensor histidine kinase. | 0.937 |
CKL_0397 | CKL_3367 | Conserved hypothetical protein. | AgrB-like protein. | 0.924 |
CKL_0397 | CKL_3368 | Conserved hypothetical protein. | Predicted two-component sensor histidine kinase. | 0.942 |
CKL_3116 | CKL_0389 | Conserved hypothetical protein. | Two-component sensor kinase. | 0.922 |
CKL_3116 | CKL_0397 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.900 |
CKL_3116 | CKL_3318 | Conserved hypothetical protein. | Predicted two-component sensor histidine kinase. | 0.904 |
CKL_3116 | CKL_3367 | Conserved hypothetical protein. | AgrB-like protein. | 0.928 |
CKL_3116 | CKL_3368 | Conserved hypothetical protein. | Predicted two-component sensor histidine kinase. | 0.904 |
CKL_3318 | CKL_0389 | Predicted two-component sensor histidine kinase. | Two-component sensor kinase. | 0.925 |
CKL_3318 | CKL_0397 | Predicted two-component sensor histidine kinase. | Conserved hypothetical protein. | 0.937 |
CKL_3318 | CKL_3116 | Predicted two-component sensor histidine kinase. | Conserved hypothetical protein. | 0.904 |
CKL_3318 | CKL_3367 | Predicted two-component sensor histidine kinase. | AgrB-like protein. | 0.951 |
CKL_3318 | CKL_3368 | Predicted two-component sensor histidine kinase. | Predicted two-component sensor histidine kinase. | 0.901 |
page 1 of 2