STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKL_3539Conserved hypothetical protein. (117 aa)    
Predicted Functional Partners:
CKL_3540
Predicted transcriptional regulator.
 
  
 0.961
CKL_3537
Predicted transcriptional regulator.
 
  
 0.887
CKL_3533
Predicted ABC transporter, permease component.
 
    0.743
CKL_3534
Predicted ABC transporter, ATPase component.
 
     0.702
CKL_3538
Conserved hypothetical protein.
       0.559
CKL_2557
Conserved hypothetical protein.
  
     0.459
CKL_1676
Transcriptional regulator.
 
  
 0.456
CKL_3536
Conserved hypothetical protein.
 
    
0.451
CKL_3541
Predicted ABC transporter, permease component.
  
    0.416
CKL_3542
Predicted ABC transporter, ATPase component.
       0.412
Your Current Organism:
Clostridium kluyveri
NCBI taxonomy Id: 431943
Other names: C. kluyveri DSM 555, Clostridium kluyveri DSM 555, Clostridium kluyveri str. DSM 555, Clostridium kluyveri strain DSM 555
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.