STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN1205_102920XRN 5'-3' exonuclease N-terminus protein. (2042 aa)    
Predicted Functional Partners:
BN1205_068460
Hydrolase, NUDIX family protein.
   
 0.997
LSM1
U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.
    
 0.994
LSM3
U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
 0.991
BN1205_107200
Putative 5'-3' exoribonuclease.
  
 
0.971
BN1205_084880
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.953
LSM4
U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
 0.885
BN1205_045800
3'-5' exoribonuclease csl4, putative.
    
 0.874
TGVEG_249650
NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX; Belongs to the NnrE/AIBP family.
   
 
 0.863
BN1205_053980
U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
 0.852
BN1205_031100
Bis(5'-nucleosyl)-tetraphosphatase (Asymmetrical), putative.
   
 0.852
Your Current Organism:
Toxoplasma gondii
NCBI taxonomy Id: 432359
Other names: T. gondii VEG, Toxoplasma gondii VEG
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.