STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BN1205_077560DEAD/DEAH box helicase domain-containing protein. (2095 aa)    
Predicted Functional Partners:
TGVEG_273850
Nucleoporin.
   
 0.975
BN1205_034920
Putative small nuclear ribonucleoprotein f (Snrnp-f).
   
 0.832
BN1205_085650
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.823
BN1205_055490
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.816
BN1205_021140
WD domain, G-beta repeat-containing protein.
   
 0.814
TGVEG_204510
WD domain, G-beta repeat-containing protein.
   
 0.814
TGVEG_249650
NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX; Belongs to the NnrE/AIBP family.
   
 0.800
LSM1
U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.
   
 0.785
BN1205_093790
Small nuclear ribonucleoprotein Sm D3.
   
 0.781
BN1205_099900
Small nuclear ribonucleoprotein G.
   
 0.774
Your Current Organism:
Toxoplasma gondii
NCBI taxonomy Id: 432359
Other names: T. gondii VEG, Toxoplasma gondii VEG
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.