STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMR64989.1Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (557 aa)    
Predicted Functional Partners:
AMR68636.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.777
AMR68233.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.768
AMR66820.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.630
AMR66999.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.625
AMR65731.1
Ferrous iron transporter C; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.580
AMR68783.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.541
AMR68723.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.538
rep
ATP-dependent DNA helicase Rep; Rep helicase is a single-stranded DNA-dependent ATPase involved in DNA replication; it can initiate unwinding at a nick in the DNA. It binds to the single-stranded DNA and acts in a progressive fashion along the DNA in the 3' to 5' direction.
     
 0.494
AMR67686.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.490
AMR66836.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
0.479
Your Current Organism:
Pseudomonas alcaligenes
NCBI taxonomy Id: 43263
Other names: ATCC 14909, CFBP 2437, CIP 101034, DSM 50342, IAM 12411, IFO 14159, JCM 5967, NBRC 14159, NCCB 76044, NCTC 10367, P. alcaligenes, VKM B-2171
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.