STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMR65717.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (395 aa)    
Predicted Functional Partners:
AMR67620.1
Undecaprenyl-phosphate glucose phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.893
AMR68646.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.782
AMR65714.1
Carbamoyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.629
AMR65715.1
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.624
AMR65716.1
Capsule biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.607
AMR65317.1
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.545
cpsB
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Capsular polysaccharide colanic acid biosynthesis protein; catalyzes the formation of GDP-mannose from GTP and alpha-D-mannose 1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.545
AMR68647.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.529
AMR65710.1
Lipopolysaccharide core heptose(I) kinase RfaP; Catalyzes the phosphorylation of heptose(I) of the outer membrane lipopolysaccharide core; Belongs to the protein kinase superfamily. KdkA/rfaP family.
  
  
 0.453
AMR65709.1
Glucosyltransferase I RfaG; Catalyzes the addition of the first glucose residue to the LPS core; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.452
Your Current Organism:
Pseudomonas alcaligenes
NCBI taxonomy Id: 43263
Other names: ATCC 14909, CFBP 2437, CIP 101034, DSM 50342, IAM 12411, IFO 14159, JCM 5967, NBRC 14159, NCCB 76044, NCTC 10367, P. alcaligenes, VKM B-2171
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.