STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IF1G_10778Splicing factor 3a subunit 3. (501 aa)    
Predicted Functional Partners:
IF1G_01139
Uncharacterized protein.
   
 0.999
IF1G_05560
Splicing factor 3A subunit 2.
    
 0.999
IF1G_04784
U2 small nuclear ribonucleoprotein A.
   
 0.998
IF1G_09220
RNA recognition domain-containing protein.
    
 0.996
IF1G_04070
Pre-mRNA-processing ATP-dependent RNA helicase PRP5.
   
 0.996
IF1G_02187
Splicing factor 3B subunit 3.
   
 0.996
IF1G_00015
Splicing factor 3b.
   
 0.996
IF1G_02017
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
   
 0.995
IF1G_00902
Splicing factor subunit; Belongs to the SF3B5 family.
   
 0.994
IF1G_02906
Pre-mRNA splicing factor cef-1.
   
 
 0.992
Your Current Organism:
Cordyceps javanica
NCBI taxonomy Id: 43265
Other names: C. javanica, CBS 134.22, Cordyceps javanica (Frieder. & Bally) Kepler, B. Shrestha & Spatafora, 2017, Isaria javanica, Isaria javanicus, Paecilomyces javanica, Paecilomyces sp. ARSEF 3776, Paecilomyces sp. ARSEF 3778, Spicaria javanica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.