STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IF1G_09933Ubiquitin ligase subunit CulD; Belongs to the cullin family. (831 aa)    
Predicted Functional Partners:
IF1G_00735
UV-damaged DNA binding protein.
  
 0.999
IF1G_03037
WD domain-containing protein.
    
 0.997
IF1G_06924
Cullin binding protein CanA.
   
 0.979
IF1G_00650
DNA excision repair protein ERCC-8.
    
 0.974
IF1G_06643
COP9 signalosome complex subunit 5.
    
 0.968
IF1G_02446
DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes.
    
 0.962
IF1G_02535
COP9 signalosome subunit CsnD.
    
 0.962
IF1G_08453
COP9 signalosome subunit 6 (CsnF).
    
 0.945
IF1G_07671
COP9 subunit 3.
    
  0.944
IF1G_10661
COP9 signalosome complex subunit 2.
   
 0.942
Your Current Organism:
Cordyceps javanica
NCBI taxonomy Id: 43265
Other names: C. javanica, CBS 134.22, Cordyceps javanica (Frieder. & Bally) Kepler, B. Shrestha & Spatafora, 2017, Isaria javanica, Isaria javanicus, Paecilomyces javanica, Paecilomyces sp. ARSEF 3776, Paecilomyces sp. ARSEF 3778, Spicaria javanica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.