Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
IF1G_0885460S ribosomal protein L28. (156 aa)    
Predicted Functional Partners:
IF1G_06739
Ribosomal protein L26.
   
 0.999
IF1G_04079
60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.
   
 0.999
IF1G_07660
60S ribosomal protein L5.
   
 0.999
IF1G_05745
60S ribosomal protein L33.
   
 0.999
IF1G_02601
60S ribosomal protein L31.
   
 0.999
IF1G_01092
Ribosomal protein L21e.
   
 0.999
IF1G_10046
Ribosomal L22e family protein.
   
 0.998
IF1G_09993
60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
   
 0.998
IF1G_07917
60S ribosomal protein L14-B.
   
 0.998
IF1G_07102
60S ribosomal protein L7.
   
 0.998
Your Current Organism:
Cordyceps javanica
NCBI taxonomy Id: 43265
Other names: C. javanica, CBS 134.22, Cordyceps javanica (Frieder. & Bally) Kepler, B. Shrestha & Spatafora, 2017, Isaria javanica, Isaria javanicus, Paecilomyces javanica, Paecilomyces sp. ARSEF 3776, Paecilomyces sp. ARSEF 3778, Spicaria javanica
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